Widespread antibiotic resistance has become one of the most urgent threats to global health, estimated to cause 700 000 deaths each year globally. Antibiotic resistance happens when bacteria, viruses, and fungi develop the ability to defeat the drugs designed to kill them. That means the germs are not killed and continue to grow, and results in things like multi-drug resistant tuberculosis (MDR-TB), a growing global pandemic.

Resistance to antibiotics is encoded by antibiotic resistance genes (ARGs), which can be easily transmitted between the bacteria and viruses that we target with antibiotics, reducing the effectiveness of antibiotics all over the world. Accurately identifying ARGs is a critical step to understanding how they are spread between various disease-causing organisms.

The challenge is to build a classifier that can detect ARGs. Using genetic sequences as input, the classifier should be able to identify if a gene is antibiotic resistant or not.

About IndabaX Tunisia 2022

The third edition of IndabaX Tunisia will take place from the 3rd to the 4th of December 2022 as a Online event. If you are a beginner and curious to learn more or if you are an expert in Machine Learning, you are encouraged to join us in our event IndabaX Tunisia 2022 and be part of a network fully committed to building the future of AI in Tunisia. It is an opportunity for the Tunisian AI community to meet, discover the most recent advances in the field and interact with world-leading AI researchers.

About IEEE Sup'Com

IEEE Sup'Com Student Branch is an organizational unit of IEEE within Sup'Com that has over 150 members. Like any other branch of IEEE, our SB serves as a platform for students to learn from each other and meet with faculty members and professionals who are members of the largest professional association in the world. It aims through its technical and non-technical activities to develop their leadership potential, participate in competitions, and contribute to social and humanitarian causes.

About Instadeep

InstaDeep delivers AI-powered decision-making systems for the Enterprise. With expertise in both machine intelligence research and concrete business deployments, we provide a competitive advantage to our customers in an AI-first world. As one of the leading AI companies in Africa, InstaDeep knows first-hand what African talent is truly capable of. InstaDeep has more than 120 employees spread across its headquarters in London, and offices in Paris, Tunis, Dubai, Lagos and Cape Town. In addition to its connections to African educational institutions, the company also possesses strong ties to elite French schools and top-rated universities in the UK.

The evaluation metric for this challenge is Log Loss.

Values should be probabilities and can be between 0 and 1 inclusive.

1 indicates that the gene is antibody resistant and 0 indicates that it is not.

Your submission file should look like:

ID       label   
test_0    0.98        
test_1    0.56

1st  place: 2 500 TND

2nd place: 1 500 TND

3rd place: 1 000 TND

There are 500 points available for this challenge.

This is a private hackathon only open to IndabaX Tunisia participants.

Teams and collaboration

You may participate in competitions as an individual or in a team of up to four people. When creating a team, the team must have a total submission count less than or equal to the maximum allowable submissions as of the formation date. A team will be allowed the maximum number of submissions for the competition, minus the total number of submissions among team members at team formation. Prizes are transferred only to the individual players or to the team leader.

Multiple accounts per user are not permitted, and neither is collaboration or membership across multiple teams. Individuals and their submissions originating from multiple accounts will be immediately disqualified from the platform.

Code must not be shared privately outside of a team. Any code that is shared, must be made available to all competition participants through the platform. (i.e. on the discussion boards).

The Zindi user who sets up a team is the default Team Leader. The Team Leader can invite other data scientists to their team. Invited data scientists can accept or reject invitations. Until a second data scientist accepts an invitation to join a team, the data scientist who initiated a team remains an individual on the leaderboard. No additional members may be added to teams within the final 5 days of the competition or the last hour of a hackathon, unless otherwise stated in the competition rules

A team can be disbanded if it has not yet made a submission. Once a submission is made individual members cannot leave the team.

All members in the team receive points associated with their ranking in the competition and there is no split or division of the points between team members.

Datasets and packages

The solution must use publicly-available, open-source packages only.

You may use only the datasets provided for this competition. Automated machine learning tools such as automl are not permitted.

You may use pretrained models as long as they are openly available to everyone.

The data used in this competition is the sole property of Zindi and the competition host. You may not transmit, duplicate, publish, redistribute or otherwise provide or make available any competition data to any party not participating in the Competition (this includes uploading the data to any public site such as Kaggle or GitHub). You may upload, store and work with the data on any cloud platform such as Google Colab, AWS or similar, as long as 1) the data remains private and 2) doing so does not contravene Zindi’s rules of use.

You must notify Zindi immediately upon learning of any unauthorised transmission of or unauthorised access to the competition data, and work with Zindi to rectify any unauthorised transmission or access.

Your solution must not infringe the rights of any third party and you must be legally entitled to assign ownership of all rights of copyright in and to the winning solution code to Zindi.

Submissions and winning

You may make a maximum of 30 submissions per day.

You may make a maximum of 60 submissions for this competition.

Before the end of the competition you need to choose 2 submissions to be judged on for the private leaderboard. If you do not make a selection your 2 best public leaderboard submissions will be used to score on the private leaderboard.

Zindi maintains a public leaderboard and a private leaderboard for each competition. The Public Leaderboard includes approximately 20% of the test dataset. While the competition is open, the Public Leaderboard will rank the submitted solutions by the accuracy score they achieve. Upon close of the competition, the Private Leaderboard, which covers the other 80% of the test dataset, will be made public and will constitute the final ranking for the competition.

Note that to count, your submission must first pass processing. If your submission fails during the processing step, it will not be counted and not receive a score; nor will it count against your daily submission limit. If you encounter problems with your submission file, your best course of action is to ask for advice on the Competition’s discussion forum.

If you are in the top 5 at the time the leaderboard closes, we will email you to request your code. On receipt of email, you will have 12 hours to respond and submit your code following the submission guidelines detailed below. Failure to respond will result in disqualification.

If your solution places 1st, 2nd, or 3rd on the final leaderboard, you will be required to submit your winning solution code to us for verification, and you thereby agree to assign all worldwide rights of copyright in and to such winning solution to Zindi.

If two solutions earn identical scores on the leaderboard, the tiebreaker will be the date and time in which the submission was made (the earlier solution will win).

If the error metric requires probabilities to be submitted, do not set thresholds (or round your probabilities) to improve your place on the leaderboard. In order to ensure that the client receives the best solution Zindi will need the raw probabilities. This will allow the clients to set thresholds to their own needs.

The winners will be paid via bank transfer, PayPal, or other international money transfer platform. International transfer fees will be deducted from the total prize amount, unless the prize money is under $500, in which case the international transfer fees will be covered by Zindi. In all cases, the winners are responsible for any other fees applied by their own bank or other institution for receiving the prize money. All taxes imposed on prizes are the sole responsibility of the winners. The top 3 winners or team leaders will be required to present Zindi with proof of identification, proof of residence and a letter from your bank confirming your banking details.

You acknowledge and agree that Zindi may, without any obligation to do so, remove or disqualify an individual, team, or account if Zindi believes that such individual, team, or account is in violation of these rules. Entry into this competition constitutes your acceptance of these official competition rules.

Zindi is committed to providing solutions of value to our clients and partners. To this end, we reserve the right to disqualify your submission on the grounds of usability or value. This includes but is not limited to the use of data leaks or any other practices that we deem to compromise the inherent value of your solution.

Zindi also reserves the right to disqualify you and/or your submissions from any competition if we believe that you violated the rules or violated the spirit of the competition or the platform in any other way. The disqualifications are irrespective of your position on the leaderboard and completely at the discretion of Zindi.

Please refer to the FAQs and Terms of Use for additional rules that may apply to this competition. We reserve the right to update these rules at any time.

Reproducibility of submitted code

• If your submitted code does not reproduce your score on the leaderboard, we reserve the right to adjust your rank to the score generated by the code you submitted.
• If your code does not run you will be dropped from the top 10. Please make sure your code runs before submitting your solution.
• Always set the seed. Rerunning your model should always place you at the same position on the leaderboard. When running your solution, if randomness shifts you down the leaderboard we reserve the right to adjust your rank to the closest score that your submission reproduces.
• We expect full documentation. This includes:
• All data used
• Output data and where they are stored
• Explanation of features used
• A requirements file with all packages and versions used
• Your solution must include the original data provided by Zindi and validated external data (if allowed)
• All editing of data must be done in a notebook (i.e. not manually in Excel)
• Environment code to be run. (e.g. Google Colab or the specifications of your local machine)
• Expected run time for each notebook. This will be useful to the review team for time and resource allocation.

Data standards:

• Your submitted code must run on the original train, test, and other datasets provided.
• If external data is allowed, external data must be freely and publicly available, including pre-trained models with standard libraries. If external data is allowed, any data used should be shared with Zindi to be approved and then shared on the discussion forum. Zindi will also make note of the external data available on the data page.
• Packages:
• You must submit a requirements file with all packages and versions used.
• If a requirements file is not provided, solutions will be run on the most recent packages available.
• Custom packages in your submission notebook will not be accepted.
• You may only use tools available to everyone i.e. no paid services or free trials that require a credit card.

Consequences of breaking any rules of the competition or submission guidelines:

• First offence: No prizes or points for 6 months (probation period). If you are caught cheating, all individuals involved in cheating will be disqualified from the challenge(s) you were caught in and you will be disqualified from winning any competitions or Zindi points for the next six months.
• Second offence: Banned from the platform. If you are caught for a second time your Zindi account will be disabled and you will be disqualified from winning any competitions or Zindi points using any other account.
• Teams with individuals who are caught cheating will not be eligible to win prizes or points in the competition in which the cheating occurred, regardless of the individuals’ knowledge of or participation in the offence.
• Teams with individuals who have previously committed an offence will not be eligible for any prizes for any competitions during the 6-month probation period.

Monitoring of submissions

• We will review the top 5 solutions of every competition when the competition ends.
• We reserve the right to request code from any user at any time during a challenge. You will have 24 hours to submit your code following the rules for code review (see above). Zindi reserves the right not to explain our reasons for requesting code. If you do not submit your code within 24 hours you will be disqualified from winning any competitions or Zindi points for the next six months. If you fall under suspicion again and your code is requested and you fail to submit your code within 24 hours, your Zindi account will be disabled and you will be disqualified from winning any competitions or Zindi points with any other account.

How to enrol in your first Zindi competition

How to create a team on Zindi

How to update your profile on Zindi

The challenge starts on 3 December 2022 at 17:00 PM GMT.

Competition closes on 4 December 17:00 PM GMT.

The private leaderboard and winners will be revealed on 4 December 18:30 PM GMT

We reserve the right to update the contest timeline if necessary.